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\(\log\det K_T\) with \(K_T = XX'/p\), the relationship matrix of the training set (overall genomic variation). Larger is better. It needs at least as many columns as rows, otherwise \(K_T\) is singular and the score is minus infinity.

Usage

gv_overall_score(X)

Arguments

X

A numeric matrix of the training set (row: individual; column: marker or PC).

Value

A number.

Details

See criteria for the list of criteria and the package website for one page per criterion.

References

Chen, S.-P., Sung, W.-H., & Liao, C.-T. (2024). Constructing training sets for genomic selection to identify superior genotypes in candidate populations. Theoretical and Applied Genetics, 137, 270. <doi:10.1007/s00122-024-04766-y>

Author

Jen-Hsiang Ou

Examples

data(geno)
gv_overall_score(geno[1:50, ])
#> [1] 169.8436